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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12321898_12322127_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12321898 - 12322127
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCGCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
CTCGTGTCACCC
Flanking Amino Acid:
IRATVQLVVAVFVTFKLEPE
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
75.6
0.58
0.8
65.7
36
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
37.3
-0.9
2.3
44.77
44.2

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005