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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12322278_12322447_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12322278 - 12322447
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAT
U12 Branch Point Sequence:
GCCGCCACATCC
Flanking Amino Acid:
EKPTIQWTKTDGSSLPSHVS
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
48.9
-0
1.2
56.9
40.5
Major PPT
68.3
0.41
0.9
61.4
35
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
39.5
-0.8
2
43.94
43.7

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005