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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12322568_12322691_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12322568 - 12322691
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCCGCGGTAACC
Flanking Amino Acid:
IEGYARVHVLEKLKFTPPPQ
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
40.5
-0.7
2.6
48.91
47.7

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005