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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12322828_12323027_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12322828 - 12323027
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCGGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GACACCCCAATC
Flanking Amino Acid:
WYRNGVSISEDSRFEISENG
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
64.7
0.33
1
64.6
36.5
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
44.7
-0.4
1.8
50.54
39.7

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005