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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12323514_12323643_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12323514 - 12323643
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
CCTGTTTGAGCC
Flanking Amino Acid:
LVLKATLRLAEIEEMAPFSP
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
73.9
0.54
0.8
65.2
36.2
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
44.3
-0.4
1.7
49.67
41.6

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005