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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12324862_12325351_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12324862 - 12325351
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCCCGCTCACCC
Flanking Amino Acid:
VLRCHVDGHPRPTWQWFRDG
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
77.3
37.9
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
73.8
0.54
0.8
67.1
32.7
Minor 5ss
35.6
-1.6
3.8
56.2
48
Minor BPS
39.7
-0.8
2.1
43.27
44.5

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005