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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12337614_12337746_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12337614 - 12337746
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCCCA
5'SS Class:
major
3'SS Sequence:
CCTTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GTAGGCTGACGT
Flanking Amino Acid:
TERAPLRVITRVFYGITTEE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
58.5
42.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
81.7
0.71
0.7
77.3
24.7
Minor 5ss
38.3
-1.3
3
48.7
47
Minor BPS
38.4
-0.8
2.2
53.99
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003610
12337439 - 12339206
1768