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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12338171_12339110_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12338171 - 12339110
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTTTGTCAC
5'SS Class:
weak_major
3'SS Sequence:
CCTGTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
TGTGCTCTGGCC
Flanking Amino Acid:
SGCQTPARVGCEEAAYEERH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.6
0.06
1.3
50
40.7
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
78.1
0.63
0.9
72
38
Minor 5ss
38.9
-1.2
2.7
46.5
41.9
Minor BPS
37
-1
3.5
58.76
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003545
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003610
12337439 - 12339206
1768