Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12347908_12348243_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12347908 - 12348243

Intron Length:

336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTCGTACG

5'SS Class:

major

3'SS Sequence:

CTTCCCCGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

CTTCCCCGCACA

Flanking Amino Acid:

AHVKEFGSVDDEHKPIWMHA

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.2

60.3

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

70.3

0.46

0.9

64.4

Minor 5ss

31.5

-2.1

2.6

35.1

Minor BPS

45.4

-0.3

2.2

62.63

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003547

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021011

12340634 - 12350705

10072

ENSAPLT00000003653

12340634 - 12350723

10090