Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12369815_12369903_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12369815 - 12369903

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGAGCC

5'SS Class:

major

3'SS Sequence:

GTGTCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAGCAC

U12 Branch Point Sequence:

CCTGCCTGCAGC

Flanking Amino Acid:

NYLRFLLVPLGSHPLAKYLA

Intron Amino Acid Position:

553

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

Major BPS

41.5

-0.5

1.3

37.8

Major PPT

72.2

0.5

0.9

66.1

35.8

Minor 5ss

25.8

-2.8

3.1

25.9

36.5

Minor BPS

42.3

-0.6

2.2

50.11

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024646

12367064 - 12381335

14272

ENSAPLT00000014351

12367064 - 12382760

15697