Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12370341_12371143_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12370341 - 12371143

Intron Length:

803

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAC

U12 Branch Point Sequence:

GTGGCTTCACCC

Flanking Amino Acid:

LVNVAEWQGQYVSEQLLAHK

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

81.3

32.8

Major BPS

59.7

0.24

1.3

65.3

41.6

Major PPT

75.8

0.58

0.9

72.5

32.1

Minor 5ss

30.6

-2.2

2.6

36.7

40.4

Minor BPS

45.9

-0.3

1.9

54.69

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024646

12367064 - 12381335

14272

ENSAPLT00000014351

12367064 - 12382760

15697