About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12371757_12371953_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12371757 - 12371953
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAC
U12 Branch Point Sequence:
GGAGCCCCAACG
Flanking Amino Acid:
EEPGAEVPAVELAAEEPSPR
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
44.9
-0.3
1.2
48
33
Major PPT
76.4
0.59
0.9
73.9
36.8
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
44.1
-0.5
2
47.41
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024646
12367064 - 12381335
14272
ENSAPLT00000014351
12367064 - 12382760
15697