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Intron Name: Anas_platyrhynchos_platyrhynchos_3_12378357_12381206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12378357 - 12381206

Intron Length:

2850

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTCC

5'SS Class:

major

3'SS Sequence:

AACCTTTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGCAA

U12 Branch Point Sequence:

AGCTGTGCAACC

Flanking Amino Acid:

SSVLIAVKIQGSKRVLRSNE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

66.7

40.1

Major BPS

50.7

0.02

1.5

63.4

44.3

Major PPT

0.65

0.9

72.9

36.4

Minor 5ss

43.7

-0.7

3.1

59.5

45.4

Minor BPS

39.7

-0.8

2.3

49.08

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024646

12367064 - 12381335

14272

ENSAPLT00000014351

12367064 - 12382760

15697