About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12414407_12414510_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12414407 - 12414510
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAGAC
U12 Branch Point Sequence:
CTTGCTGCCACG
Flanking Amino Acid:
EKLQQLLNRMTQQEQAQKKQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65
41.7
Major BPS
56.7
0.17
1.1
54.6
40.9
Major PPT
80.6
0.69
0.9
76.1
32.4
Minor 5ss
44.3
-0.6
2.8
53.9
44.3
Minor BPS
37.7
-1.1
2.5
46.32
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018940
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037708
12413937 - 12417111
3175