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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12415223_12416953_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12415223 - 12416953
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGCAACG
5'SS Class:
weak_major
3'SS Sequence:
TGCTCCCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAC
U12 Branch Point Sequence:
TTACTCTGAGCC
Flanking Amino Acid:
GGKKTAKPAVNMFFFSSFRP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.3
57.2
41.7
Major BPS
62.6
0.31
1.2
55.1
41.7
Major PPT
67.4
0.39
1
64.2
37
Minor 5ss
29.3
-2.4
4.1
40.7
39.5
Minor BPS
51.9
0.04
1.7
65.77
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018940
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022019
12413937 - 12417111
3175