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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12427432_12430702_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12427432 - 12430702
Intron Length:
3271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TGCTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCGAG
U12 Branch Point Sequence:
CCTTTGCGAGCG
Flanking Amino Acid:
PATCSMPSMSADCFSNDIHK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
43.9
-0.3
1.7
43.9
48.6
Major PPT
78.5
0.64
0.9
69.2
41.8
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
34.9
-1.2
2.3
39.93
44

Associated Gene:

Gene:
KLHDC3
Ensembl Gene ID:
ENSAPLG00000013378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029052
12422702 - 12430747
8046