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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12428874_12430702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12428874 - 12430702
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
GCTTTCTTAGCG
Flanking Amino Acid:
ACNVLYAFDVNTHKWFTPKV
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
61.2
0.21
1.7
63.56
44.4

Associated Gene:

Gene:
KLHDC3
Ensembl Gene ID:
ENSAPLG00000013378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013962
12420324 - 12432786
12463