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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12430880_12432632_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12430880 - 12432632
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGCC
5'SS Class:
major
3'SS Sequence:
CTTGTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TGGGCTCAAACT
Flanking Amino Acid:
RQIDVHVFNAVSLRWIKLPP
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.9
40.1
Major BPS
67.6
0.44
1.2
75
40
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
37
-1.5
3.4
50.9
45.8
Minor BPS
46
-0.2
2
64.77
45.8

Associated Gene:

Gene:
KLHDC3
Ensembl Gene ID:
ENSAPLG00000013378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013962
12420324 - 12432786
12463