About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12438084_12438174_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12438084 - 12438174
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
GTTTGTGCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATCAAG
U12 Branch Point Sequence:
CCCTCCCCGGCT
Flanking Amino Acid:
AGPGLQERLQMLGLHLPEPP
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
41.1
-0.5
1.6
48.4
43.5
Major PPT
71.9
0.49
1
65.5
41
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
33.7
-1.2
3.5
55.66
46.7

Associated Gene:

Gene:
MEA1
Ensembl Gene ID:
ENSAPLG00000002019
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002017
12437841 - 12438668
828