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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12441750_12442086_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12441750 - 12442086
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GCTGTCTGACTC
Flanking Amino Acid:
KKTVETEAVQMLKDIKKEKV
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.9
43.5
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
72.5
0.51
0.9
66.2
40.8
Minor 5ss
28.6
-2.5
2.8
33.5
41.7
Minor BPS
44.9
-0.4
1.7
50.75
40.8

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834