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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1244334_1247859_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1244334 - 1247859
Intron Length:
3526

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATTTACCCAATT
Flanking Amino Acid:
SVKTKTEQFQVNARATKEWT
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.9
76.9
33.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.9
0.72
0.6
81.4
23.7
Minor 5ss
22.5
-3.2
3.6
30.6
42.8
Minor BPS
50.5
0.09
2
76.95
39.2

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831