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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12448891_12451043_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12448891 - 12451043
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
GATTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATTT
Flanking Amino Acid:
LYKNSKSHWNKTIHGLIYNA
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
75.5
40.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.8
0.69
0.9
74
36.3
Minor 5ss
40.5
-1.1
3.4
58.6
40.3
Minor BPS
62.8
0.48
1.8
80.66
41.5

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834