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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12451172_12453274_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12451172 - 12453274
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTCTCTCCCACT
Flanking Amino Acid:
AKCVSSPHFQVAERALYYWN
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
67.5
37.7
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
77
0.61
0.8
70.4
28.9
Minor 5ss
36.1
-1.6
2.8
44.9
43.1
Minor BPS
46.7
-0.1
2.2
72.5
44.6

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834