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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12453446_12456190_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12453446 - 12456190
Intron Length:
2745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAACTTCTAACG
Flanking Amino Acid:
LEKDSSLTEPVIVGLLKFWP
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.6
0.42
0.8
65.6
29.1
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
49.1
-0.2
1.7
55.44
39.4

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834