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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12457219_12457644_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12457219 - 12457644
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AAGACATTAAAT
Flanking Amino Acid:
GIAELLEILGSIINGFALPL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.1
0.81
0.7
84.7
30.2
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
52.3
0.15
1.8
67.6
42.1

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834