About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12458270_12458756_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12458270 - 12458756
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GGTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACTGACTGACTT
Flanking Amino Acid:
KYIDQKFVLSLLDLFDSEDP
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.5
0.37
0.9
58.7
38.3
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
44.3
-0.3
1.9
59.76
44

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834