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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12458850_12460379_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12458850 - 12460379
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
GGATTTCTAAGT
Flanking Amino Acid:
TLEAAWPHLQLVYEFFLRFL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
83.7
0.76
0.7
76.8
31.9
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
46.8
-0.1
1.9
62.56
41.4

Associated Gene:

Gene:
PPP2R5D
Ensembl Gene ID:
ENSAPLG00000012555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013113
12441612 - 12465445
23834