About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12475094_12491096_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12475094 - 12491096
Intron Length:
16003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CCCTCTTTACGC
Flanking Amino Acid:
ADTGMKRPLGRRYGLWFRLR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
74
0.6
1
65.6
41.1
Major PPT
76.3
0.59
0.8
72.3
31.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
47.2
-0.2
1.9
52.59
45.8

Associated Gene:

Gene:
ABHD12
Ensembl Gene ID:
ENSAPLG00000012148
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012689
12474942 - 12508690
33749