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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12491222_12493695_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12491222 - 12493695
Intron Length:
2474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
IQAKLVFLNFVRVPYFIDLK
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1
70.9
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
33.5
-1.9
3.2
44.4
43.5
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
ABHD12
Ensembl Gene ID:
ENSAPLG00000012148
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012689
12474942 - 12508690
33749