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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12495993_12498430_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12495993 - 12498430
Intron Length:
2438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCCTGAATC
Flanking Amino Acid:
ILYLHGNAGTRGGDHRVELY
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
75
0.56
1
69.4
41.5
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
74.7
0.76
1.4
79.19
36.3

Associated Gene:

Gene:
ABHD12
Ensembl Gene ID:
ENSAPLG00000012148
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012689
12474942 - 12508690
33749