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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12506606_12506858_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12506606 - 12506858
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTGCCACTAACG
Flanking Amino Acid:
EEARSHPFSVIYRYFPGFDW
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
81.5
31.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
25.8
-2.8
3.6
31.6
35.9
Minor BPS
47
-0.3
2
54.96
45.5

Associated Gene:

Gene:
ABHD12
Ensembl Gene ID:
ENSAPLG00000012148
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012689
12474942 - 12508690
33749