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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12512410_12512527_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12512410 - 12512527
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
CCTCCTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAG
U12 Branch Point Sequence:
CAGCCCCTACAG
Flanking Amino Acid:
VEDVEALDRKGYNALEYYER
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.4
63.4
39.5
Major BPS
43.6
-0.4
1.5
52.3
42
Major PPT
76.6
0.6
0.9
71.7
32.7
Minor 5ss
28.9
-2.4
3.3
33.2
41.8
Minor BPS
40.4
-0.8
2
40.06
43.1

Associated Gene:

Gene:
PYGB
Ensembl Gene ID:
ENSAPLG00000010355
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010898
12511756 - 12525274
13519