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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12514255_12514542_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12514255 - 12514542
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCTCTTTTGATT
Flanking Amino Acid:
NPGLADVIAEKIGEGFVTDL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.5
0.73
0.6
81.5
23.6
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
56.6
0.29
1.2
66.85
39

Associated Gene:

Gene:
PYGB
Ensembl Gene ID:
ENSAPLG00000010355
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010898
12511756 - 12525274
13519