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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12515937_12516801_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12515937 - 12516801
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CCCCCAAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGTCCCCCAAAT
Flanking Amino Acid:
ISRVLYPNDNFFEGKELRLK
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.9
33.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
62.2
0.27
0.9
54.8
32.9
Minor 5ss
28.9
-2.4
3.1
33.6
35
Minor BPS
49.2
0.02
2
73.57
42.1

Associated Gene:

Gene:
PYGB
Ensembl Gene ID:
ENSAPLG00000010355
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010898
12511756 - 12525274
13519