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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12517615_12519405_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12517615 - 12519405
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAAGG
Flanking Amino Acid:
PEGVKWVDTQVVLAMPYDTP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
55.9
0.05
1.9
63.41
44.6

Associated Gene:

Gene:
PYGB
Ensembl Gene ID:
ENSAPLG00000010355
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010898
12511756 - 12525274
13519