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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12523401_12525031_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12523401 - 12525031
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAAAT
U12 Branch Point Sequence:
CGGGAGTGAAAT
Flanking Amino Acid:
QQHYYERDPKRIYYLSLEFY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
78.2
0.63
0.8
69.9
36.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
36.6
-0.9
2.2
47.59
44.3

Associated Gene:

Gene:
PYGB
Ensembl Gene ID:
ENSAPLG00000010355
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010898
12511756 - 12525274
13519