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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12532674_12534002_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12532674 - 12534002
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
CTTGCCATGACA
Flanking Amino Acid:
TQITFLPHTEATLQTSPAGH
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
89.7
0.89
0.6
82.1
29.9
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
58.8
0.27
1.8
71.33
40.9

Associated Gene:

Gene:
ENTPD6
Ensembl Gene ID:
ENSAPLG00000013990
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014620
12531804 - 12540688
8885