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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12538244_12539028_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12538244 - 12539028
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAATAT
U12 Branch Point Sequence:
TCTCTGCTCACA
Flanking Amino Acid:
LSAYADDVEKSGQGIKELLE
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
55.2
0.13
1.2
53
41.2
Major PPT
78
0.63
0.8
71.7
32.8
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
40.3
-0.7
2.5
56.54
42.9

Associated Gene:

Gene:
ENTPD6
Ensembl Gene ID:
ENSAPLG00000013990
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014620
12531804 - 12540688
8885