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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12539106_12540429_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12539106 - 12540429
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCCT
5'SS Class:
major
3'SS Sequence:
TGCTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGCTTTTGAACA
Flanking Amino Acid:
HIFKFTQQPKETPKLTHETF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
43.9
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
71.9
0.49
1
68.9
40.8
Minor 5ss
32.3
-2
3.5
48.5
47.2
Minor BPS
61.8
0.37
1.4
68.24
38.3

Associated Gene:

Gene:
ENTPD6
Ensembl Gene ID:
ENSAPLG00000013990
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014620
12531804 - 12540688
8885