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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1255946_1263548_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1255946 - 1263548
Intron Length:
7603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTTTAACC
Flanking Amino Acid:
GIEMEIKWVPGLKENAEEMV
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.9
74.8
39.7
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
87.1
1.14
0.9
88.77
25.9

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831