Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12567185_12567979_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12567185 - 12567979

Intron Length:

795

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

GTTACCCCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAC

U12 Branch Point Sequence:

TTACCCCTGAAG

Flanking Amino Acid:

KTELPEDRIQVWFQNRRAKW

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

59.1

0.23

1.2

52.7

42.9

Major PPT

62.9

0.29

1.1

61.4

35.2

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

48.8

-0.2

1.9

59.47

41.6

Associated Gene:

Gene:

VSX1

Ensembl Gene ID:

ENSAPLG00000014568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015171

12566160 - 12568964

2805