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Intron Name: Anas_platyrhynchos_platyrhynchos_3_12568161_12568698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12568161 - 12568698

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCATC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAGCAA

U12 Branch Point Sequence:

GCAACCGGCACC

Flanking Amino Acid:

LVGSCAPWLLGMHKKSMEVS

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

76.2

39.9

Major BPS

48.5

-0

1.4

38.9

Major PPT

70.9

0.47

0.9

64.4

36.5

Minor 5ss

43.5

-0.7

2.9

52.9

44.1

Minor BPS

38.4

-0.9

2.3

45.58

42.5

Associated Gene:

Gene:

VSX1

Ensembl Gene ID:

ENSAPLG00000014568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015171

12566160 - 12568964

2805