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Intron Name: Anas_platyrhynchos_platyrhynchos_3_12577359_12577938_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12577359 - 12577938

Intron Length:

580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

GACTCCATGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

73.2

37.5

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

83.7

0.76

0.7

82.3

29.8

Minor 5ss

31.6

-2.1

3.4

43.4

44.3

Minor BPS

56.5

0.28

1.6

69.79

41.1

Associated Gene:

Gene:

PEX6

Ensembl Gene ID:

ENSAPLG00000014569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042386

12576379 - 12589929

13551

ENSAPLT00000015228

12576379 - 12590082

13704