Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12578353_12578436_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12578353 - 12578436

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTTAA

5'SS Class:

major

3'SS Sequence:

CTCTGTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTCAC

U12 Branch Point Sequence:

TCCCCAGTCACT

Flanking Amino Acid:

CDALRPHLNSQATTLSRVGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

70.4

31.3

Major BPS

54.8

0.12

1.2

58.7

38.1

Major PPT

77.9

0.63

0.9

71.2

38.5

Minor 5ss

36.3

-1.6

2.9

45.6

43.6

Minor BPS

41.8

-0.5

2.5

61.99

47.6

Associated Gene:

Gene:

PEX6

Ensembl Gene ID:

ENSAPLG00000014569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042386

12576379 - 12589929

13551

ENSAPLT00000015228

12576379 - 12590082

13704