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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12585260_12585339_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12585260 - 12585339
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CGTGCTCTAACC
Flanking Amino Acid:
VATTCTMTFLSVKGPELINM
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
52.5
0.06
1.8
63.35
42.4

Associated Gene:

Gene:
PEX6
Ensembl Gene ID:
ENSAPLG00000014569
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042386
12576379 - 12589929
13551
ENSAPLT00000015228
12576379 - 12590082
13704