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Intron Name: Anas_platyrhynchos_platyrhynchos_3_12585402_12585712_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12585402 - 12585712

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCTCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CTTTTCTCATCT

Flanking Amino Acid:

VGQSEENVRNVFARARAAAP

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

78.1

0.63

0.8

69.6

36.7

Minor 5ss

27.1

-2.6

31.8

42.6

Minor BPS

59.4

0.37

1.9

79.56

42.7

Associated Gene:

Gene:

PEX6

Ensembl Gene ID:

ENSAPLG00000014569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042386

12576379 - 12589929

13551

ENSAPLT00000015228

12576379 - 12590082

13704