Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12587812_12589424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12587812 - 12589424

Intron Length:

1613

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CGTTTCTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

GTGGCTCTGACA

Flanking Amino Acid:

QLQVLSAVTRKFKLDPSVNL

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

80.3

26.9

Major BPS

69.1

0.47

60.7

37.6

Major PPT

76.1

0.59

72.8

37.5

Minor 5ss

30.6

-2.2

3.3

40.3

40.1

Minor BPS

48.5

-0.1

1.8

59.4

40.7

Associated Gene:

Gene:

PEX6

Ensembl Gene ID:

ENSAPLG00000014569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042386

12576379 - 12589929

13551

ENSAPLT00000015228

12576379 - 12590082

13704