Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12589565_12589896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12589565 - 12589896

Intron Length:

332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGAGCC

5'SS Class:

major

3'SS Sequence:

CTGTCTCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TTTGCTCTCAGT

Flanking Amino Acid:

VKRKVEWIEEGLDTESSALI

Intron Amino Acid Position:

546

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

63.2

36.7

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

70.8

0.47

0.9

65.8

34.9

Minor 5ss

24.9

-2.9

3.3

32.9

42.4

Minor BPS

45.2

-0.2

2.3

71.75

45.6

Associated Gene:

Gene:

PEX6

Ensembl Gene ID:

ENSAPLG00000014569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015228

12576379 - 12590082

13704