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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12596158_12596284_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12596158 - 12596284
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGGAT
U12 Branch Point Sequence:
CGTGCTGGGATC
Flanking Amino Acid:
SAEVADLKKQCDVLVEEYED
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.4
40.8
Major BPS
47.6
-0.1
1.5
46.5
47
Major PPT
74.7
0.56
0.9
69.7
36.7
Minor 5ss
38.4
-1.3
3.3
53.8
43.4
Minor BPS
39.5
-0.8
2
45.86
37.8

Associated Gene:

Gene:
CNPY3
Ensembl Gene ID:
ENSAPLG00000017921
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043826
12594716 - 12599589
4874