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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12596408_12596644_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12596408 - 12596644
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GGAGCGTCACCT
Flanking Amino Acid:
ERSGSNRFAKGMSETFETLH
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
39.4
-0.7
2.3
54.56
46.5

Associated Gene:

Gene:
CNPY3
Ensembl Gene ID:
ENSAPLG00000017921
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043826
12594716 - 12599589
4874